Basic Information
Locus ID:
nbisL1-mrna-2319
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
ATPase family associated with various cellular activities (AAA)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 8175448 | 8184017 | + | nbisL1-mrna-2319 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.98 | 133,699.42 Da | 44.29 | 92.05 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00009 | AAA | 560 | 693 | 3.7092E-24 | - |
| Pfam | PF02423 | Ornithine cyclodeaminase/mu-crystallin family | 926 | 1207 | 1.7E-57 | IPR003462 |
| Pfam | PF17862 | AAA+ lid domain | 715 | 756 | 4.8E-11 | IPR041569 |
| Pfam | PF00004 | ATPase family associated with various cellular activities (AAA) | 562 | 692 | 4.7E-38 | IPR003959 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 522 | 759 | 2.68E-56 | IPR027417 |
| SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | 888 | 1207 | 5.33E-75 | IPR036291 |
| Gene3D | G3DSA:3.40.50.300 | - | 521 | 693 | 6.5E-94 | IPR027417 |
| Gene3D | G3DSA:3.40.50.720 | - | 1014 | 1191 | 2.1E-77 | - |
| Gene3D | G3DSA:3.30.1780.10 | ornithine cyclodeaminase, domain 1 | 922 | 1204 | 2.1E-77 | IPR023401 |
| Gene3D | G3DSA:1.10.8.60 | - | 694 | 769 | 6.5E-94 | - |
| SMART | SM00382 | AAA_5 | 558 | 695 | 1.3E-20 | IPR003593 |
| ProSitePatterns | PS00674 | AAA-protein family signature. | 665 | 684 | - | IPR003960 |
| PRINTS | PR00830 | Endopeptidase La (Lon) serine protease (S16) signature | 991 | 1010 | 6.8E-5 | - |
| PRINTS | PR00830 | Endopeptidase La (Lon) serine protease (S16) signature | 566 | 585 | 6.8E-5 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 468 | 486 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 750 | 787 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 209 | 224 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 449 | 505 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 184 | 224 | - | - |
| Coils | Coil | Coil | 744 | 765 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G28000.1 | P-loop containing nucleoside triphosphate hydrolases superfamily protein. | 0 |
| RefSeq | XP_021671422.1 | nuclear valosin-containing protein-like [Hevea brasiliensis] | 0 |
| Q9FLY0 | Protein SAR DEFICIENT 4 OS=Arabidopsis thaliana OX=3702 GN=SARD4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6A6MNZ1 | AAA domain-containing protein OS=Hevea brasiliensis OX=3981 GN=GH714_040026 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology