Basic Information
Locus ID:
nbisL1-mrna-2318
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
Lysosomal
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 19672860 | 19680127 | - | nbisL1-mrna-2318 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.70 | 115,377.88 Da | 37.83 | 84.78 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10810 | GH38N_AMII_LAM_like | 40 | 316 | 0.0 | - |
| Pfam | PF17677 | Glycosyl hydrolases family 38 C-terminal beta sandwich domain | 909 | 1017 | 4.3E-10 | IPR041147 |
| Pfam | PF01074 | Glycosyl hydrolases family 38 N-terminal domain | 41 | 352 | 1.7E-97 | IPR000602 |
| Pfam | PF09261 | Alpha mannosidase middle domain | 358 | 446 | 1.5E-19 | IPR015341 |
| Pfam | PF07748 | Glycosyl hydrolases family 38 C-terminal domain | 613 | 827 | 1.6E-50 | IPR011682 |
| SUPERFAMILY | SSF88688 | Families 57/38 glycoside transferase middle domain | 356 | 449 | 1.99E-26 | IPR028995 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 459 | 1020 | 2.83E-145 | IPR011013 |
| SUPERFAMILY | SSF88713 | Glycoside hydrolase/deacetylase | 29 | 355 | 6.12E-112 | IPR011330 |
| Gene3D | G3DSA:2.60.40.1360 | - | 895 | 1025 | 7.3E-35 | - |
| Gene3D | G3DSA:2.70.98.30 | - | 611 | 875 | 2.0E-95 | - |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 400 | 456 | 6.4E-20 | IPR037094 |
| Gene3D | G3DSA:2.60.40.1180 | - | 478 | 610 | 5.5E-30 | IPR013780 |
| Gene3D | G3DSA:3.20.110.10 | Glycoside hydrolase 38, N terminal domain | 40 | 320 | 2.8E-122 | IPR027291 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 321 | 399 | 3.3E-31 | IPR037094 |
| SMART | SM00872 | Alpha_mann_mid_2 | 357 | 431 | 1.4E-20 | IPR015341 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G26720.1 | Glycosyl hydrolase family 38 protein. | 0 |
| RefSeq | XP_039011276.1 | alpha-mannosidase At3g26720-like isoform X1 [Hibiscus syriacus] | 0 |
| P94078 | Alpha-mannosidase At3g26720 OS=Arabidopsis thaliana OX=3702 GN=At3g26720 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0D2NJH7 | Alpha-mannosidase OS=Gossypium raimondii OX=29730 GN=B456_006G000300 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology