Basic Information
Locus ID:
nbisL1-mrna-23167
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
CHY zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002121F_pilon | 708585 | 717663 | - | nbisL1-mrna-23167 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.54 | 123,002.44 Da | 49.15 | 81.47 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12108 | Hr-like | 306 | 434 | 2.27927E-19 | - |
| CDD | cd12108 | Hr-like | 47 | 173 | 9.90758E-31 | - |
| CDD | cd12108 | Hr-like | 654 | 810 | 8.38019E-26 | - |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 650 | 811 | 1.1E-7 | IPR012312 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 49 | 175 | 2.0E-12 | IPR012312 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 304 | 436 | 6.3E-7 | IPR012312 |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 646 | 875 | 4.8E-24 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 303 | 451 | 1.1E-19 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 43 | 193 | 4.9E-34 | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G18290.1 | zinc finger protein-related. Encodes BRUTUS (BTS), a putative E3 ligase protein with metal ion binding and DNA binding domains, which negatively regulates the response to iron deficiency. | 0 |
| RefSeq | XP_024466172.1 | zinc finger protein BRUTUS isoform X1 [Populus trichocarpa] | 0 |
| Q8LPQ5 | Zinc finger protein BRUTUS OS=Arabidopsis thaliana OX=3702 GN=BTS PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2K0V3 | Uncharacterized protein LOC105113207 isoform X1 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology