Basic Information
Locus ID:
nbisL1-mrna-2316
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 21752213 | 21755568 | - | nbisL1-mrna-2316 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.95 | 50,342.69 Da | 45.75 | 96.14 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 295 | 337 | 7.00708E-15 | - |
| CDD | cd16454 | RING-H2_PA-TM-RING | 83 | 125 | 2.59788E-14 | - |
| Pfam | PF13639 | Ring finger domain | 294 | 337 | 4.3E-10 | IPR001841 |
| Pfam | PF13639 | Ring finger domain | 83 | 125 | 1.4E-9 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 276 | 340 | 4.08E-16 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 65 | 132 | 3.53E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 257 | 342 | 6.0E-18 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 47 | 130 | 1.0E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 295 | 336 | 0.03 | IPR001841 |
| SMART | SM00184 | ring_2 | 83 | 124 | 0.011 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 83 | 125 | 9.848491 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 295 | 337 | 10.055033 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 356 | 376 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 359 | 376 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G48030.2 | - | 0 |
| RefSeq | XP_034707634.1 | RING-H2 finger protein ATL56-like [Vitis riparia] | 0 |
| Q7X843 | RING-H2 finger protein ATL48 OS=Arabidopsis thaliana OX=3702 GN=ATL48 PE=1 SV=2 | 0 | |
| TrEMBL | A0A438EFR3 | Putative RING-H2 finger protein ATL49 OS=Vitis vinifera OX=29760 GN=ATL49_0 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology