Basic Information
Locus ID:
nbisL1-mrna-23141
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
ubiquitin receptor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002121F_pilon | 508417 | 513126 | - | nbisL1-mrna-23141 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.82 | 36,867.28 Da | 52.86 | 83.39 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14382 | UBA2_RAD23_plant | 294 | 336 | 7.23425E-24 | - |
| CDD | cd01805 | Ubl_Rad23 | 1 | 74 | 2.4973E-31 | - |
| Pfam | PF00627 | UBA/TS-N domain | 137 | 172 | 3.3E-13 | IPR015940 |
| Pfam | PF00240 | Ubiquitin family | 3 | 76 | 4.8E-19 | IPR000626 |
| Pfam | PF09280 | XPC-binding domain | 224 | 272 | 7.8E-19 | IPR015360 |
| Pfam | PF00627 | UBA/TS-N domain | 298 | 333 | 7.0E-12 | IPR015940 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 216 | 279 | 2.09E-19 | IPR036353 |
| SUPERFAMILY | SSF46934 | UBA-like | 278 | 340 | 6.7E-15 | IPR009060 |
| SUPERFAMILY | SSF46934 | UBA-like | 131 | 185 | 1.82E-11 | IPR009060 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 79 | 1.69E-22 | IPR029071 |
| Gene3D | G3DSA:1.10.8.10 | - | 290 | 337 | 2.9E-22 | - |
| Gene3D | G3DSA:1.10.10.540 | - | 212 | 273 | 1.0E-20 | IPR036353 |
| Gene3D | G3DSA:1.10.8.10 | - | 127 | 177 | 4.4E-21 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 80 | 1.5E-27 | - |
| SMART | SM00727 | CBM | 214 | 258 | 5.7E-6 | IPR006636 |
| SMART | SM00165 | uba_6 | 134 | 174 | 0.0037 | IPR015940 |
| SMART | SM00165 | uba_6 | 298 | 335 | 1.1E-8 | IPR015940 |
| SMART | SM00213 | ubq_7 | 1 | 75 | 8.5E-21 | IPR000626 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 1 | 341 | 1.7E-100 | IPR004806 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 295 | 336 | 14.643341 | IPR015940 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 79 | 20.370096 | IPR000626 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 132 | 175 | 12.137243 | IPR015940 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 309 | 323 | 7.8E-34 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 324 | 339 | 7.8E-34 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 243 | 265 | 7.8E-34 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 292 | 308 | 7.8E-34 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 81 | 109 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 188 | 211 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 195 | 211 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G38470.1 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_043806690.1 | ubiquitin receptor RAD23c isoform X2 [Manihot esculenta] | 0 |
| Q84L30 | Ubiquitin receptor RAD23d OS=Arabidopsis thaliana OX=3702 GN=RAD23D PE=1 SV=2 | 0 | |
| TrEMBL | A0A2P2MDW7 | Ubiquitin receptor RAD23 OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology