Basic Information
Locus ID:
nbisL1-mrna-23119
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
(NAC) domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002121F_pilon | 365373 | 370014 | + | nbisL1-mrna-23119 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.82 | 49,835.54 Da | 48.61 | 65.16 | -0.89 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02365 | No apical meristem (NAM) protein | 56 | 193 | 6.9E-22 | IPR003441 |
| SUPERFAMILY | SSF101941 | NAC domain | 40 | 212 | 1.57E-36 | IPR036093 |
| Gene3D | G3DSA:2.170.150.80 | NAC domain | 64 | 215 | 8.0E-29 | IPR036093 |
| ProSiteProfiles | PS51005 | NAC domain profile. | 55 | 212 | 30.849333 | IPR003441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 304 | 331 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 372 | 394 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 304 | 349 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G25580.1 | NAC (No Apical Meristem) domain transcriptional regulator superfamily protein. Encodes suppressor of gamma response 1 (SOG1), a putative transcription factor governing multiple responses to DNA damage. | 0 |
| RefSeq | XP_021649926.1 | SUPPRESSOR OF GAMMA RESPONSE 1 isoform X1 [Hevea brasiliensis] | 0 |
| Q6NQK2 | SUPPRESSOR OF GAMMA RESPONSE 1 OS=Arabidopsis thaliana OX=3702 GN=SOG1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2JQB8 | NAC transcription factors 7 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology