Basic Information
Locus ID:
nbisL1-mrna-231
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 1988470 | 1990173 | + | nbisL1-mrna-231 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.37 | 34,461.19 Da | 40.92 | 97.69 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 186 | 273 | 1.14969E-31 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 224 | 264 | 6.3E-13 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 54 | 158 | 2.2E-22 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 54 | 284 | 3.86E-46 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 218 | 302 | 3.0E-27 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 52 | 183 | 2.4E-39 | IPR027417 |
| SMART | SM00487 | ultradead3 | 20 | 187 | 4.1E-16 | IPR014001 |
| SMART | SM00490 | helicmild6 | 132 | 264 | 1.8E-12 | IPR001650 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 133 | 303 | 16.384621 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 54 | 172 | 19.003361 | IPR014001 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 118 | 126 | - | IPR000629 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13920.1 | eukaryotic translation initiation factor 4A1. eukaryotic translation initiation factor 4A-1 | 0 |
| RefSeq | XP_016689701.1 | eukaryotic initiation factor 4A-9 [Gossypium hirsutum] | 0 |
| Q40468 | Eukaryotic initiation factor 4A-15 OS=Nicotiana tabacum OX=4097 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7J8PZ25 | Eukaryotic initiation factor 4A-11 OS=Gossypium raimondii OX=29730 GN=Gorai_011079 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology