Basic Information
Locus ID:
nbisL1-mrna-23069
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002121F_pilon | 51532 | 57076 | - | nbisL1-mrna-23069 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.14 | 65,014.52 Da | 51.02 | 95.94 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 263 | 551 | 1.13091E-47 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 308 | 341 | 7.2E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 514 | 551 | 2.7E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 260 | 296 | 7.6E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 471 | 508 | 0.014 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 256 | 551 | 1.62E-62 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 516 | 572 | 9.7E-11 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 250 | 515 | 4.0E-55 | IPR015943 |
| SMART | SM00320 | WD40_4 | 258 | 297 | 3.3E-7 | IPR001680 |
| SMART | SM00667 | Lish | 62 | 94 | 0.0035 | IPR006594 |
| SMART | SM00320 | WD40_4 | 345 | 384 | 0.14 | IPR001680 |
| SMART | SM00320 | WD40_4 | 467 | 509 | 1.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 386 | 423 | 19.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 512 | 552 | 2.1E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 425 | 463 | 29.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 303 | 342 | 1.7E-6 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 265 | 306 | 12.613797 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 265 | 299 | 10.416506 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 310 | 351 | 14.719144 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 519 | 554 | 13.950525 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 310 | 347 | 11.286501 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 519 | 554 | 11.550137 | - |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 62 | 94 | 9.251271 | IPR006594 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 95 | 152 | 9.029953 | IPR006595 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 284 | 298 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 561 | 582 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08560.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_021675834.1 | uncharacterized WD repeat-containing protein C343.04c isoform X2 [Hevea brasiliensis] | 0 |
| Q9FNN2 | WD repeat-containing protein 26 homolog OS=Arabidopsis thaliana OX=3702 GN=WDR26 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2MN05 | Putative WD repeat-containing protein C343.04c isoform X1 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology