Basic Information
Locus ID:
nbisL1-mrna-23068
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002121F_pilon | 43700 | 49487 | - | nbisL1-mrna-23068 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.20 | 70,566.35 Da | 48.23 | 97.15 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 261 | 605 | 8.17074E-39 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 305 | 340 | 1.9E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 345 | 382 | 0.25 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 258 | 294 | 2.7E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 568 | 605 | 7.5E-7 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 256 | 607 | 4.58E-55 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 249 | 538 | 4.4E-53 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 539 | 629 | 1.1E-13 | IPR015943 |
| SMART | SM00320 | WD40_4 | 384 | 424 | 9.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 256 | 295 | 3.6E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 468 | 517 | 350.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 301 | 340 | 4.3E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 566 | 606 | 3.6E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 343 | 382 | 0.22 | IPR001680 |
| SMART | SM00320 | WD40_4 | 426 | 464 | 120.0 | IPR001680 |
| SMART | SM00667 | Lish | 60 | 92 | 0.0094 | IPR006594 |
| SMART | SM00668 | ctlh | 93 | 150 | 4.4E-4 | IPR006595 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 60 | 92 | 9.052911 | IPR006594 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 100 | 150 | 9.662186 | IPR006595 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 263 | 297 | 10.548323 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 573 | 608 | 13.917108 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 263 | 304 | 13.449252 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 308 | 345 | 11.73468 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 308 | 349 | 15.35409 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 573 | 608 | 11.523771 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 282 | 296 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 282 | 296 | 6.8E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 369 | 383 | 6.8E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 593 | 607 | 6.8E-5 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08560.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_021675834.1 | uncharacterized WD repeat-containing protein C343.04c isoform X2 [Hevea brasiliensis] | 0 |
| Q9FNN2 | WD repeat-containing protein 26 homolog OS=Arabidopsis thaliana OX=3702 GN=WDR26 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2MMZ7 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology