Basic Information
Locus ID:
nbisL1-mrna-23052
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002120F_pilon | 733372 | 736258 | - | nbisL1-mrna-23052 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.61 | 60,477.80 Da | 56.81 | 77.92 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 374 | 422 | 6.2E-6 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 295 | 353 | 2.5E-8 | IPR002867 |
| Pfam | PF13456 | Reverse transcriptase-like | 82 | 180 | 9.1E-7 | IPR002156 |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 214 | 258 | 1.4E-4 | IPR018957 |
| SUPERFAMILY | SSF57850 | RING/U-box | 367 | 430 | 1.9E-14 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 211 | 279 | 6.77E-12 | - |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 83 | 185 | 2.66E-7 | IPR012337 |
| Gene3D | G3DSA:1.20.120.1750 | - | 351 | 476 | 1.3E-14 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 209 | 292 | 5.1E-14 | IPR013083 |
| Gene3D | G3DSA:3.30.420.10 | - | 65 | 199 | 9.7E-9 | IPR036397 |
| SMART | SM00647 | ibrneu5 | 281 | 353 | 1.4E-9 | IPR002867 |
| SMART | SM00184 | ring_2 | 383 | 424 | 17.0 | IPR001841 |
| SMART | SM00647 | ibrneu5 | 363 | 422 | 0.31 | IPR002867 |
| SMART | SM00184 | ring_2 | 214 | 260 | 0.0036 | IPR001841 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 210 | 434 | 29.806747 | IPR044066 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 214 | 258 | 10.615647 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 231 | 240 | - | IPR017907 |
Gene Ontology
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19670.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_012074621.1 | probable E3 ubiquitin-protein ligase ARI11 [Jatropha curcas] | 0 |
| Q9SKC4 | Probable E3 ubiquitin-protein ligase ARI10 OS=Arabidopsis thaliana OX=3702 GN=ARI10 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2QM81 | Putative E3 ubiquitin-protein ligase rbrA OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg20879, jg20880, jg22388 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_5018 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah029577 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_5g105360, BVRB_7g163120 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg16124, Sbi_jg56771 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg24628 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000007042, gene:ENSEOMG00000034169 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0015650, CQ.Regalona.r1.7BG0019060 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30078190 |
| Apiaceae | Apium graveolens | 2 | Ag6G01200, AgUnG00396 |
| Arecaceae | Cocos nucifera | 1 | COCNU_06G019060 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103719299 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_06.101.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri17G06246, Ftri18G29723 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G19670.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10024888m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g18240.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g071270.2N, BniB05g016750.2N, BniB07g009220.2N |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno17g03630 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g15740 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-852 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG12.188 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00012939 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb6G29893, Lb6G31154, Lb6G31779 |
| Poaceae | Echinochloa crus-galli | 3 | AH05.4183, BH05.4260, CH05.4492 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0399190, gene-QOZ80_5BG0447880 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0422080.1 |
| Poaceae | Oryza coarctata | 2 | Oco23G011040, Oco24G010840 |
| Poaceae | Oryza sativa | 1 | LOC_Os12g43560.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_08G165200, gene-BS78_K301400 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0704696 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr04G019720, Chr06G020660, Chr19G007170, Chr27G009720 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G035800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG002400, gene_TRIDC5BG002230 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G015900.1, TraesCS5B02G014200.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb032750_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-44433, nbis-gene-47436 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g25396, Zma_g26186 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc10g09280 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_14_RagTag.1069 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-16921 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-15946 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-17351 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000025l.185 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-8576 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-23052 |
| Salicaceae | Populus euphratica | 2 | populus_peu29054, populus_peu30447 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132624884 |
| Solanaceae | Solanum chilense | 1 | SOLCI001298800 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107011703 |
| Zosteraceae | Zostera marina | 1 | Zosma03g24190.v3.1 |