Basic Information
Locus ID:
nbisL1-mrna-2304
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Zinc finger, C3HC4 type family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000060F_pilon | 1872248 | 1876484 | - | nbisL1-mrna-2304 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.71 | 32,482.68 Da | 43.72 | 91.94 | 0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 34 | 82 | 1.97664E-14 | - |
| Pfam | PF12906 | RING-variant domain | 34 | 81 | 5.5E-11 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 30 | 86 | 1.55E-14 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 24 | 96 | 1.5E-17 | IPR013083 |
| SMART | SM00744 | ringv_2 | 33 | 82 | 4.9E-16 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 26 | 88 | 20.171276 | IPR011016 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G22120.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_012075182.1 | uncharacterized protein LOC105636509 [Jatropha curcas] | 0 |
| TrEMBL | A0A2P2JN27 | Uncharacterized protein MANES_13G088500 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology