Basic Information
Locus ID:
nbisL1-mrna-23026
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
lysM domain receptor-like kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 5341485 | 5343305 | - | nbisL1-mrna-23026 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.13 | 62,325.16 Da | 48.39 | 92.66 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 337 | 456 | 1.3E-21 | IPR001245 |
| Pfam | PF01476 | LysM domain | 83 | 128 | 0.045 | IPR018392 |
| Pfam | PF01476 | LysM domain | 149 | 193 | 4.3E-4 | IPR018392 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 290 | 547 | 7.38E-41 | IPR011009 |
| Gene3D | G3DSA:3.10.350.10 | LysM domain | 76 | 140 | 4.8E-5 | IPR036779 |
| Gene3D | G3DSA:3.10.350.10 | LysM domain | 148 | 195 | 4.5E-5 | IPR036779 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 472 | 559 | 2.8E-6 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 283 | 377 | 2.7E-14 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 379 | 471 | 4.5E-20 | - |
| SMART | SM00220 | serkin_6 | 314 | 542 | 3.9E-8 | IPR000719 |
| SMART | SM00257 | LysM_2 | 148 | 193 | 0.45 | IPR018392 |
| SMART | SM00257 | LysM_2 | 82 | 128 | 0.56 | IPR018392 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 245 | 546 | 19.608818 | IPR000719 |
| ProSiteProfiles | PS51782 | LysM domain profile. | 147 | 192 | 10.106257 | IPR018392 |
| ProSiteProfiles | PS51782 | LysM domain profile. | 81 | 127 | 8.669618 | IPR018392 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 198 | 225 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 200 | 221 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G23770.1 | protein kinase family protein / peptidoglycan-binding LysM domain-containing protein. | 0 |
| RefSeq | XP_002533278.1 | lysM domain receptor-like kinase 4 [Ricinus communis] | 0 |
| O64825 | LysM domain receptor-like kinase 4 OS=Arabidopsis thaliana OX=3702 GN=LYK4 PE=1 SV=1 | 0 | |
| TrEMBL | B9T4V9 | BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1, putative OS=Ricinus communis OX=3988 GN=RCOM_0411660 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology