Basic Information
Locus ID:
nbisL1-mrna-23014
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
BEST Arabidopsis thaliana protein match is
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 7558150 | 7565250 | - | nbisL1-mrna-23014 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.72 | 58,443.07 Da | 51.63 | 72.48 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04601 | Domain of unknown function (DUF569) | 1 | 144 | 5.0E-62 | IPR007679 |
| Pfam | PF04601 | Domain of unknown function (DUF569) | 225 | 366 | 1.4E-75 | IPR007679 |
| SUPERFAMILY | SSF50405 | Actin-crosslinking proteins | 7 | 149 | 1.05E-20 | IPR008999 |
| SUPERFAMILY | SSF50405 | Actin-crosslinking proteins | 229 | 371 | 6.41E-27 | IPR008999 |
| Gene3D | G3DSA:2.80.10.50 | - | 5 | 144 | 1.8E-15 | - |
| Gene3D | G3DSA:2.80.10.50 | - | 233 | 352 | 1.0E-18 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 378 | 429 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 392 | 424 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G27100.1 | Actin cross-linking protein. | 0 |
| RefSeq | XP_012091970.1 | - | 0 |
| TrEMBL | A0A2P2JPF7 | Uncharacterized protein LOC105116278 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology