Basic Information
Locus ID:
nbisL1-mrna-23006
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
RALF-like 34
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 4688830 | 4689288 | - | nbisL1-mrna-23006 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.14 | 17,578.27 Da | 50.47 | 69.93 | -0.62 |
Protein Domain:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G67070.1 | ralf-like 34. Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. | 0 |
| RefSeq | XP_021677784.1 | protein RALF-like 34 [Hevea brasiliensis] | 0 |
| Q9FHA6 | Protein RALF-like 34 OS=Arabidopsis thaliana OX=3702 GN=RALFL34 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2Q6K0 | Protein RALF-like 34 OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg10667, jg17424 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_23943 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah027447 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg13029 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg9026 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00010219 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl33935, Sgl39320, Sgl39338 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0025070, CQ.Regalona.r1.6BG0026570 |
| Apiaceae | Apium graveolens | 1 | Ag4G01096 |
| Arecaceae | Cocos nucifera | 2 | COCNU_02G010560, COCNU_15G002010 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103701254, gene-LOC103703194 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_02.739.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri13G33786, Ftri18G15623, Ftri1G31594 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G67070.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10005130m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g29610.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB04g000390.2N, BniB06g014910.2N, BniB07g043800.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G1823 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G1326 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno08g07770 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g13930 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-10041, nbisL1-mrna-6634 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.416 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00029214 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG10.1095, evm.TU.LG17.1102 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g20340 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_3_RagTag.357, evm.TU.Scaffold_6_RagTag.1871 ... |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-19178, nbisL1-mrna-612, nbisL1-mrna-698 |
| Rhizophoraceae | Ceriops tagal | 4 | nbisL1-mrna-11861, nbisL1-mrna-12229, nbisL1-mrna-6562 ... |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-11911, nbisL1-mrna-6080, nbisL1-mrna-6602 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000011l.465, add.evm.TU.utg000019l.425 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00007475, Maker00012741 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-19341, nbisL1-mrna-23006 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-10009, nbisL1-mrna-2226, nbisL1-mrna-3218 |
| Salicaceae | Populus euphratica | 3 | populus_peu14395, populus_peu23386, populus_peu37474 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132622134 |
| Solanaceae | Solanum chilense | 1 | SOLCI000524000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107010343 |
| Tamaricaceae | Reaumuria soongarica | 3 | STRG.6659_chr03_-, gene_3192, gene_3420 |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G2194 |
| Zosteraceae | Zostera marina | 1 | Zosma05g11780.v3.1 |