Basic Information
Locus ID:
nbisL1-mrna-2300
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Short Name:
RDR2
Description:
Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 19504891 | 19509379 | + | nbisL1-mrna-2300 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.31 | 131,378.94 Da | 41.62 | 84.62 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00590 | RRM_SF | 8 | 85 | 1.31039E-4 | - |
| Pfam | PF05183 | RNA dependent RNA polymerase | 376 | 952 | 2.5E-178 | IPR007855 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 7 | 123 | 1.4E-6 | IPR035979 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 6 | 89 | 8.961646 | IPR000504 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G11130.1 | RNA-dependent RNA polymerase 2. Encodes RNA-dependent RNA polymerase that is required for endogenous siRNA (but not miRNA) formation. Nomenclature according to Xie, et al. (2004). | 0 |
| RefSeq | XP_039066997.1 | LOW QUALITY PROTEIN: RNA-dependent RNA polymerase 2-like [Hibiscus syriacus] | 0 |
| O82504 | RNA-dependent RNA polymerase 2 OS=Arabidopsis thaliana OX=3702 GN=RDR2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7J9LVJ4 | RNA-dependent RNA polymerase OS=Gossypium schwendimanii OX=34291 GN=Goshw_013111 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology