Basic Information
Locus ID:
nbisL1-mrna-2297
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 001711F_pilon | 5031827 | 5033609 | - | nbisL1-mrna-2297 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.44 | 23,601.79 Da | 44.37 | 80.79 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 19 | 63 | 3.66774E-28 | - |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 20 | 61 | 7.5E-9 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 18 | 74 | 6.14E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 6 | 87 | 1.7E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 21 | 61 | 4.4E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 21 | 62 | 13.418717 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 36 | 45 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 77 | 106 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G23780.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_002533271.1 | E3 ubiquitin-protein ligase RNF185 [Ricinus communis] | 0 |
| Q09463 | E3 ubiquitin ligase rnf-5 OS=Caenorhabditis elegans OX=6239 GN=rnf-5 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2KMX6 | RING-type E3 ubiquitin transferase OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology