Basic Information
Locus ID:
nbisL1-mrna-22910
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
RING-type zinc-finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 6643571 | 6644931 | - | nbisL1-mrna-22910 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.83 | 33,765.12 Da | 50.50 | 81.54 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13445 | RING-type zinc-finger | 61 | 90 | 9.2E-6 | IPR027370 |
| SUPERFAMILY | SSF57850 | RING/U-box | 60 | 118 | 7.65E-9 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 52 | 151 | 2.7E-10 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 61 | 116 | 9.774726 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 80 | 89 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 25 | 51 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 31 | 45 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G69330.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_042981249.1 | uncharacterized protein LOC122310994 [Carya illinoinensis] | 0 |
| TrEMBL | A0A1Q3C2X7 | Zf-RING_LisH domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_18019 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology