Basic Information
Locus ID:
nbisL1-mrna-22895
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002252F_pilon | 696696 | 701029 | + | nbisL1-mrna-22895 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.79 | 92,216.99 Da | 46.61 | 80.28 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01989 | STK_N | 22 | 164 | 4.03691E-47 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 462 | 717 | 1.0E-38 | IPR001245 |
| Pfam | PF00582 | Universal stress protein family | 26 | 158 | 6.1E-7 | IPR006016 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 443 | 717 | 5.6E-67 | IPR011009 |
| SUPERFAMILY | SSF52402 | Adenine nucleotide alpha hydrolases-like | 25 | 160 | 1.51E-10 | - |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 24 | 161 | 4.4E-10 | IPR014729 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 534 | 740 | 1.1E-46 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 419 | 533 | 5.3E-25 | - |
| SMART | SM00220 | serkin_6 | 461 | 724 | 1.0E-25 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 461 | 724 | 34.972477 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 579 | 591 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 250 | 326 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 166 | 330 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 166 | 213 | - | - |
| Coils | Coil | Coil | 423 | 443 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G12000.1 | Protein kinase protein with adenine nucleotide alpha hydrolases-like domain. | 0 |
| RefSeq | XP_038707559.1 | U-box domain-containing protein 52-like isoform X1 [Tripterygium wilfordii] | 0 |
| Q9FKG6 | U-box domain-containing protein 52 OS=Arabidopsis thaliana OX=3702 GN=PUB52 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7J7DGV2 | U-box domain-containing protein 52-like OS=Tripterygium wilfordii OX=458696 GN=HS088_TW07G01124 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology