Basic Information
Locus ID:
nbisL1-mrna-22889
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Carbohydrate-binding protein of the ER
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 6418489 | 6421686 | + | nbisL1-mrna-22889 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.36 | 88,346.49 Da | 41.65 | 88.89 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 495 | 765 | 6.96924E-96 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 494 | 762 | 2.5E-48 | IPR001245 |
| Pfam | PF12819 | Malectin-like domain | 35 | 398 | 1.7E-32 | IPR024788 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 470 | 764 | 1.48E-79 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 566 | 788 | 1.2E-62 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 453 | 565 | 2.7E-33 | - |
| Gene3D | G3DSA:2.60.120.430 | - | 32 | 193 | 3.6E-23 | - |
| Gene3D | G3DSA:2.60.120.430 | - | 217 | 400 | 1.3E-30 | - |
| SMART | SM00220 | serkin_6 | 489 | 768 | 1.6E-30 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 489 | 768 | 36.781628 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 495 | 518 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 610 | 622 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G51550.1 | Malectin/receptor-like protein kinase family protein. Encodes a synergid-expressed, plasma-membrane localized receptor-like kinase that accumulates asymetrically in the synergid membrnane at the filiform apparatus and mediates male-female gametophyte interactions during pollen tube reception. | 0 |
| RefSeq | XP_021680113.1 | - | 0 |
| Q9SCZ4 | Receptor-like protein kinase FERONIA OS=Arabidopsis thaliana OX=3702 GN=FER PE=1 SV=1 | 0 | |
| TrEMBL | B9REA5 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-22823, nbisL1-mrna-22889 |