Basic Information
Locus ID:
nbisL1-mrna-22882
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 1682804 | 1686490 | - | nbisL1-mrna-22882 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.22 | 96,937.29 Da | 37.34 | 107.84 | 0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 251 | 310 | 1.1E-6 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 131 | 153 | 1.5 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 564 | 621 | 1.6E-6 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 156 | 176 | 0.33 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 38 | 76 | 4.5E-11 | IPR013210 |
| SUPERFAMILY | SSF52047 | RNI-like | 266 | 573 | 5.41E-57 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 38 | 320 | 8.16E-66 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 499 | 723 | 1.25E-40 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 190 | 291 | 3.2E-29 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 389 | 731 | 6.9E-100 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 764 | 872 | 1.3E-5 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 36 | 189 | 4.7E-45 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 292 | 388 | 1.0E-23 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 297 | 321 | 15.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 153 | 176 | 46.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 393 | 417 | 410.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 609 | 633 | 110.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 249 | 273 | 52.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 537 | 561 | 100.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 562 | 585 | 220.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 658 | 681 | 200.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 105 | 129 | 38.0 | IPR003591 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G33170.1 | Leucine-rich repeat receptor-like protein kinase family protein. | 0 |
| RefSeq | XP_002299290.2 | probable leucine-rich repeat receptor-like protein kinase At2g33170 [Populus trichocarpa] | 0 |
| O49318 | Probable leucine-rich repeat receptor-like protein kinase At2g33170 OS=Arabidopsis thaliana OX=3702 GN=At2g33170 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8T2ZYR0 | Protein kinase domain-containing protein OS=Populus deltoides OX=3696 GN=H0E87_003237 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0311270, gene-QOZ80_4BG0342480 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-2590 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-12218, nbisL1-mrna-22882 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-18159 |