Basic Information
Locus ID:
nbisL1-mrna-22880
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 1671799 | 1675566 | + | nbisL1-mrna-22880 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.54 | 120,197.44 Da | 38.40 | 105.31 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00560 | Leucine Rich Repeat | 468 | 487 | 0.11 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 88 | 126 | 1.0E-5 | IPR013210 |
| Pfam | PF13855 | Leucine rich repeat | 588 | 647 | 2.5E-6 | IPR001611 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 950 | 1040 | 5.0E-6 | IPR001245 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 833 | 942 | 3.7E-11 | IPR001245 |
| Pfam | PF13855 | Leucine rich repeat | 516 | 575 | 3.3E-7 | IPR001611 |
| SUPERFAMILY | SSF52047 | RNI-like | 327 | 712 | 9.42E-69 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 806 | 1047 | 1.57E-35 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 102 | 365 | 1.59E-50 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 450 | 754 | 3.8E-92 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 948 | 1060 | 1.7E-20 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 817 | 947 | 6.8E-23 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 86 | 245 | 6.0E-40 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 246 | 449 | 1.9E-53 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 466 | 490 | 9.2 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 346 | 370 | 79.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 586 | 610 | 22.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 298 | 322 | 260.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 394 | 418 | 110.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 201 | 225 | 11.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 538 | 562 | 11.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 683 | 707 | 40.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 829 | 1113 | 12.061262 | IPR000719 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 685 | 707 | 7.735057 | IPR001611 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 468 | 490 | 7.288416 | IPR001611 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 835 | 858 | - | IPR017441 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 469 | 482 | 2.1E-6 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 683 | 696 | 2.1E-6 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1059 | 1095 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1063 | 1095 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 10 | 34 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G24240.1 | Leucine-rich repeat receptor-like protein kinase family protein. | 0 |
| RefSeq | XP_002297823.1 | LRR receptor-like serine/threonine-protein kinase RGI1 [Populus trichocarpa] | 0 |
| Q9LHP4 | LRR receptor-like serine/threonine-protein kinase RGI1 OS=Arabidopsis thaliana OX=3702 GN=RGI1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X8A1U7 | Uncharacterized protein OS=Populus tomentosa OX=118781 GN=POTOM_014359 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 5 | jg16239, jg23095, jg35487, jg37774, jg8632 |
| Aizoaceae | Mesembryanthemum crystallinum | 3 | gene_18865, gene_4434, gene_6466 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah021152, Ah028241 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_3g056500, BVRB_3g056510 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg59594, Sbi_jg63058 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg23836 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00018285 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl03023, Sgl08141 |
| Amaranthaceae | Chenopodium album | 5 | gene:ENSEOMG00000006469, gene:ENSEOMG00000015025 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.3AG0018170, CQ.Regalona.r1.3BG0018090 ... |
| Anacardiaceae | Pistacia vera | 4 | pistato.v30014820, pistato.v30038140, pistato.v30240610 ... |
| Apiaceae | Apium graveolens | 3 | Ag10G00744, Ag3G01101, Ag9G01670 |
| Arecaceae | Cocos nucifera | 3 | COCNU_01G021030, COCNU_07G009580, COCNU_10G007310 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103713757, gene-LOC103717746, gene-LOC103723304 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.322.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri12G09419, Ftri9G08675 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT3G24240.1, AT5G48940.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10002381m.g.v1.0, Thhalv10003549m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp2g19310.v2.2, Sp3g21670.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g037600.2N, BniB07g037620.2N |
| Casuarinaceae | Casuarina equisetifolia | 3 | Ceq03G1944, Ceq06G2028, Ceq07G0784 |
| Casuarinaceae | Casuarina glauca | 3 | Cgl03G2092, Cgl06G2135, Cgl07G0836 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno14g03570 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate01g04640, gene.Thate08g23830 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-12264, nbisL1-mrna-12265 |
| Nitrariaceae | Nitraria sibirica | 3 | evm.TU.LG04.1513, evm.TU.LG06.741, evm.TU.LG11.636 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00015123, Pov_00024534 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb2G14994, Lb2G14995, Lb3G20572 |
| Poaceae | Echinochloa crus-galli | 3 | AH09.147, BH09.225, CH09.197 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0327140, gene-QOZ80_4BG0359100 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0097060.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_033606, gene-QYE76_033612 |
| Poaceae | Oryza coarctata | 1 | Oco08G000830 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g04330.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_06G021100, gene-BS78_06G021300 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0306099 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr25G016050, Chr30G015270 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G045500 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG001450, gene_TRIDC2BG001300 |
| Poaceae | Triticum aestivum | 5 | TraesCS2A02G012900.1, TraesCS2B02G005000.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb419430_P001 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-37400, nbis-gene-52727, nbis-gene-54703 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g19279, Zma_g20851 |
| Portulacaceae | Portulaca oleracea | 6 | evm.TU.LG01.462, evm.TU.LG01.463, evm.TU.LG04.296 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g02750 |
| Rhizophoraceae | Bruguiera sexangula | 4 | evm.TU.Scaffold_5_RagTag.1183, evm.TU.Scaffold_6_RagTag.954 ... |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-15721, nbisL1-mrna-9705 |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-11275, nbisL1-mrna-21143, nbisL1-mrna-9060 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-11262, nbisL1-mrna-18125, nbisL1-mrna-820 |
| Rhizophoraceae | Kandelia candel | 3 | evm.TU.utg000006l.683, evm.TU.utg000011l.596 ... |
| Rhizophoraceae | Kandelia obovata | 3 | Maker00003123, Maker00008401, Maker00012962 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-20567, nbisL1-mrna-20676, nbisL1-mrna-22880 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-18625, nbisL1-mrna-19883, nbisL1-mrna-4345 |
| Salicaceae | Populus euphratica | 4 | populus_peu04034, populus_peu14849, populus_peu32527 ... |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132610161, gene-LOC132610948, gene-LOC132627280 |
| Solanaceae | Solanum chilense | 3 | SOLCI004502100, SOLCI006644100, SOLCI006714900 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107018427, gene-LOC107029790, gene-LOC107029871 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_6205 |
| Tamaricaceae | Tamarix chinensis | 2 | TC01G0461, TC12G0248 |
| Zosteraceae | Zostera marina | 1 | Zosma05g27400.v3.1 |