Basic Information
Locus ID:
nbisL1-mrna-22838
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Oligouridylate-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002252F_pilon | 199376 | 203316 | - | nbisL1-mrna-22838 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.21 | 38,700.37 Da | 50.44 | 77.30 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12354 | RRM3_TIA1_like | 195 | 270 | 5.17396E-32 | - |
| CDD | cd12352 | RRM1_TIA1_like | 56 | 126 | 1.0932E-36 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 56 | 122 | 8.5E-12 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 197 | 250 | 5.7E-10 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 39 | 132 | 1.11E-22 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 183 | 274 | 9.64E-18 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 2 | 138 | 1.1E-22 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 170 | 275 | 1.9E-19 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 196 | 266 | 8.1E-15 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 55 | 124 | 1.5E-16 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 54 | 128 | 14.965146 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 195 | 270 | 13.771269 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 154 | 189 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 155 | 189 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 0 |
| RefSeq | XP_017606321.1 | PREDICTED: oligouridylate-binding protein 1B-like isoform X1 [Gossypium arboreum] | 0 |
| Q9LQI9 | Oligouridylate-binding protein 1B OS=Arabidopsis thaliana OX=3702 GN=UBP1B PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2MF79 | Oligouridylate-binding protein 1-like OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology