Basic Information
Locus ID:
nbisL1-mrna-22731
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
E3 ubiquitin ligase BIG
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002189F_pilon | 363956 | 364474 | + | nbisL1-mrna-22731 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.56 | 14,751.14 Da | 51.85 | 96.02 | 0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 82 | 125 | 1.4E-10 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 82 | 129 | 5.1E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 56 | 132 | 5.8E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 83 | 125 | 2.3E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 83 | 125 | 12.430266 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G52150.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_038722142.1 | receptor homology region, transmembrane domain- and RING domain-containing protein 1 [Tripterygium wilfordii] | 0 |
| Q10R93 | Receptor homology region, transmembrane domain- and RING domain-containing protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0167500 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7J8WRU2 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-20497 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-22731 |