Basic Information
Locus ID:
nbisL1-mrna-22686
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Oligouridylate-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 001111F_pilon | 192760 | 197360 | - | nbisL1-mrna-22686 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.50 | 38,649.04 Da | 41.90 | 71.68 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12352 | RRM1_TIA1_like | 55 | 125 | 2.66281E-37 | - |
| CDD | cd12354 | RRM3_TIA1_like | 194 | 269 | 1.29216E-35 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 55 | 121 | 5.3E-13 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 196 | 255 | 4.9E-10 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 182 | 273 | 2.31E-19 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 37 | 131 | 1.33E-23 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 171 | 273 | 3.8E-21 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 2 | 136 | 1.4E-22 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 195 | 265 | 3.1E-14 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 54 | 123 | 1.6E-16 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 53 | 127 | 15.340365 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 194 | 269 | 14.538761 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 172 | 192 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 0 |
| RefSeq | XP_017606321.1 | PREDICTED: oligouridylate-binding protein 1B-like isoform X1 [Gossypium arboreum] | 0 |
| Q9LQI9 | Oligouridylate-binding protein 1B OS=Arabidopsis thaliana OX=3702 GN=UBP1B PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2MF46 | Uncharacterized protein MANES_11G016600 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology