Basic Information
Locus ID:
nbisL1-mrna-22685
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002189F_pilon | 117848 | 122395 | - | nbisL1-mrna-22685 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.64 | 63,250.82 Da | 30.78 | 83.00 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09913 | EHD | 200 | 457 | 2.71884E-142 | - |
| CDD | cd00052 | EH | 19 | 85 | 3.53102E-21 | IPR000261 |
| Pfam | PF12763 | Cytoskeletal-regulatory complex EF hand | 17 | 80 | 2.1E-6 | IPR000261 |
| Pfam | PF00350 | Dynamin family | 201 | 360 | 3.7E-11 | IPR045063 |
| Pfam | PF16880 | N-terminal EH-domain containing protein | 164 | 196 | 2.2E-15 | IPR031692 |
| Pfam | PF18150 | Domain of unknown function (DUF5600) | 448 | 550 | 1.6E-36 | IPR040990 |
| SUPERFAMILY | SSF47473 | EF-hand | 10 | 89 | 6.35E-22 | IPR011992 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 184 | 456 | 1.32E-31 | IPR027417 |
| Gene3D | G3DSA:1.10.238.10 | - | 9 | 110 | 2.3E-26 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 201 | 429 | 1.4E-163 | IPR027417 |
| Gene3D | G3DSA:1.10.268.20 | - | 165 | 550 | 1.4E-163 | - |
| SMART | SM00054 | efh_1 | 18 | 46 | 1.9 | IPR002048 |
| SMART | SM00054 | efh_1 | 52 | 80 | 2.2 | IPR002048 |
| SMART | SM00027 | eh_3 | 8 | 103 | 7.2E-14 | IPR000261 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 14 | 49 | 10.161722 | IPR002048 |
| ProSiteProfiles | PS50031 | EH domain profile. | 15 | 105 | 13.05433 | IPR000261 |
| ProSiteProfiles | PS51718 | Dynamin-type guanine nucleotide-binding (G) domain profile. | 195 | 431 | 29.60498 | IPR030381 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 51 | 83 | 8.209045 | IPR002048 |
| Coils | Coil | Coil | 482 | 502 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G20290.1 | EPS15 homology domain 1. Encodes AtEHD1, one of the Arabidopsis Eps15 homology domain proteins involved in endocytosis (AtEHD2, At4g05520). | 0 |
| RefSeq | XP_021639476.1 | EH domain-containing protein 1 [Hevea brasiliensis] | 0 |
| Q94CF0 | EH domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=EHD1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2K2C1 | EH domain-containing protein 1-like OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg21554, jg21856 |
| Aizoaceae | Mesembryanthemum crystallinum | 3 | gene_63, gene_7214, gene_7219 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah008839, Ah017421 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_4g089020, BVRB_4g089080 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg36718, Sbi_jg40240, Sbi_jg50224 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg1824, Seu_jg4658 |
| Amaranthaceae | Suaeda aralocaspica | 3 | GOSA_00011402, GOSA_00017438, GOSA_00017445 |
| Amaranthaceae | Suaeda glauca | 8 | Sgl23461, Sgl28581, Sgl28588, Sgl28756, Sgl30648, Sgl41582 ... |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000009032, gene:ENSEOMG00000009502 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.4AG0023510, CQ.Regalona.r1.4BG0024830 ... |
| Anacardiaceae | Pistacia vera | 3 | pistato.v30067850, pistato.v30156090, pistato.v30156100 |
| Apiaceae | Apium graveolens | 2 | Ag2G01740, Ag9G01606 |
| Arecaceae | Cocos nucifera | 1 | COCNU_11G007480 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103714098, gene-LOC103718510 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.146.V1.1, AsparagusV1_05.3219.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri14G01594, Ftri15G04439, Ftri18G32217 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT3G20290.1, AT4G05520.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10020459m.g.v1.0, Thhalv10028561m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp3g18320.v2.2, Sp6g04800.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB01g043600.2N, BniB07g050680.2N, BniB08g048330.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G1351 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl01G1511, Cgl04G1853 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g09010 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0069s00030.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate03g26340, gene.Thate09g11380 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-9072 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG05.1931, evm.TU.LG12.1197 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00004355, Pov_00005666, Pov_00006004 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G03428 |
| Poaceae | Echinochloa crus-galli | 8 | AH06.2778, AH07.416, AH09.2652, BH06.2578, BH07.540 ... |
| Poaceae | Eleusine coracana subsp. coracana | 6 | gene-QOZ80_2AG0102070, gene-QOZ80_2BG0155400 ... |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.2HG0213030.1, HORVU.MOREX.r3.6HG0564470.1 ... |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_020384, gene-QYE76_035637, gene-QYE76_046880 |
| Poaceae | Oryza coarctata | 5 | Oco03G002750, Oco04G002740, Oco08G018010, Oco11G015660 ... |
| Poaceae | Oryza sativa | 3 | LOC_Os02g06340.1, LOC_Os04g57350.1, LOC_Os06g47330.1 |
| Poaceae | Paspalum vaginatum | 4 | gene-BS78_04G043000, gene-BS78_06G276800, gene-BS78_K003100 ... |
| Poaceae | Puccinellia tenuiflora | 5 | Pt_Chr0200231, Pt_Chr0202576, Pt_Chr0202595, Pt_Chr0300313 ... |
| Poaceae | Sporobolus alterniflorus | 6 | Chr02G032160, Chr05G010180, Chr11G001760, Chr15G026080 ... |
| Poaceae | Thinopyrum elongatum | 3 | Tel2E01G924300, Tel6E01G259700, Tel7E01G742400 |
| Poaceae | Triticum dicoccoides | 6 | gene_TRIDC2AG075710, gene_TRIDC2BG082790 ... |
| Poaceae | Triticum aestivum | 9 | TraesCS2A02G542800.1, TraesCS2B02G572600.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb066880_P001, Zm00001eb207790_P001 ... |
| Poaceae | Zoysia japonica | 4 | nbis-gene-23150, nbis-gene-33716, nbis-gene-55034 ... |
| Poaceae | Zoysia macrostachya | 3 | Zma_g12207, Zma_g20650, Zma_g31035 |
| Portulacaceae | Portulaca oleracea | 8 | evm.TU.LG01.1942, evm.TU.LG01.690, evm.TU.LG02.504 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g16910 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_12_RagTag.1039 ... |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-23988, nbisL1-mrna-8701 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-18825, nbisL1-mrna-423 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-15098, nbisL1-mrna-21735 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000018l.68, evm.TU.utg000027l.10 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00003071, Maker00017420 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-10728, nbisL1-mrna-9414 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-22685, nbisL1-mrna-23310 |
| Salicaceae | Populus euphratica | 3 | populus_peu00947, populus_peu10426, populus_peu18419 |
| Solanaceae | Lycium barbarum | 4 | gene-LOC132615799, gene-LOC132617707, gene-LOC132627305 ... |
| Solanaceae | Solanum chilense | 4 | SOLCI001045200, SOLCI003127800, SOLCI003923800 ... |
| Solanaceae | Solanum pennellii | 4 | gene-LOC107001829, gene-LOC107003174, gene-LOC107007673 ... |
| Tamaricaceae | Reaumuria soongarica | 3 | gene_13114, gene_16655, gene_2457 |
| Tamaricaceae | Tamarix chinensis | 3 | TC05G2697, TC07G0876, TC08G0162 |
| Zosteraceae | Zostera marina | 2 | Zosma03g04650.v3.1, Zosma03g17680.v3.1 |