Basic Information
Locus ID:
nbisL1-mrna-22666
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
glycerophosphoryl diester phosphodiesterase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002189F_pilon | 11809 | 18288 | - | nbisL1-mrna-22666 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.39 | 88,938.43 Da | 48.63 | 94.40 | 0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08604 | GDPD_SHV3_repeat_2 | 413 | 713 | 1.24639E-167 | - |
| CDD | cd08603 | GDPD_SHV3_repeat_1 | 53 | 351 | 7.44321E-166 | - |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 418 | 708 | 1.1E-28 | IPR030395 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 411 | 714 | 1.99E-44 | IPR017946 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 53 | 350 | 1.2E-37 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 52 | 351 | 9.8E-36 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 411 | 713 | 1.3E-42 | IPR017946 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 412 | 714 | 37.796696 | IPR030395 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 53 | 352 | 34.776016 | IPR030395 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G55480.1 | SHV3-like 1. Glycerophosphoryl diester phosphodiesterase-like protein involved in cell wall cellulose accumulation and pectin linking. Impacts root hair, trichome and epidermal cell development. | 0 |
| RefSeq | XP_002529027.2 | glycerophosphodiester phosphodiesterase GDPDL3 [Ricinus communis] | 0 |
| Q9FJ62 | Glycerophosphodiester phosphodiesterase GDPDL4 OS=Arabidopsis thaliana OX=3702 GN=GDPDL4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2K3S5 | glycerophosphodiester phosphodiesterase OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology