Basic Information
Locus ID:
nbisL1-mrna-22664
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Vacuolar protein sorting-associated protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 3897305 | 3936601 | - | nbisL1-mrna-22664 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.77 | 491,648.91 Da | 43.69 | 90.13 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12624 | N-terminal region of Chorein or VPS13 | 2 | 109 | 4.7E-30 | IPR026854 |
| Pfam | PF16910 | Repeating coiled region of VPS13 | 619 | 837 | 7.8E-34 | IPR031642 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 2024 | 2184 | 4.9E-10 | IPR009291 |
| Pfam | PF16908 | Vacuolar sorting-associated protein 13, N-terminal | 133 | 352 | 2.8E-58 | IPR031646 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 2258 | 2404 | 5.2E-11 | IPR009291 |
| Pfam | PF06650 | SHR-binding domain of vacuolar-sorting associated protein 13 | 3367 | 3533 | 8.5E-12 | IPR009543 |
| SMART | SM00694 | dysfc | 2976 | 3013 | 0.0027 | IPR006614 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 4379 | 4398 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1817 | 1842 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1818 | 1833 | - | - |
Gene Ontology
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17140.2 | pleckstrin homology (PH) domain-containing protein. | 0 |
| RefSeq | XP_021649531.1 | uncharacterized protein LOC110641940 isoform X2 [Hevea brasiliensis] | 0 |
| Q54LB8 | Intermembrane lipid transfer protein vps13A OS=Dictyostelium discoideum OX=44689 GN=vps13A PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2MGV9 | PH domain-containing protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology