Basic Information
Locus ID:
nbisL1-mrna-22663
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
strubbelig-receptor family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 001111F_pilon | 48537 | 49919 | + | nbisL1-mrna-22663 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.20 | 17,388.86 Da | 69.43 | 85.99 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 15 | 121 | 5.9E-8 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 31 | 143 | 6.7E-11 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 131 | 152 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 129 | 152 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G53730.2 | STRUBBELIG-receptor family 6. | 0 |
| RefSeq | XP_021654256.1 | protein STRUBBELIG-RECEPTOR FAMILY 6-like [Hevea brasiliensis] | 0 |
| Q9C8M9 | Protein STRUBBELIG-RECEPTOR FAMILY 6 OS=Arabidopsis thaliana OX=3702 GN=SRF6 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2LNH4 | Leucine-rich repeat receptor-like protein kinase OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 1 | Ah025700 |
| Apiaceae | Apium graveolens | 1 | Ag9G02435 |
| Arecaceae | Cocos nucifera | 2 | scaffold004835G000020, scaffold032126G000040 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_03.2446.V1.1, AsparagusV1_05.2985.V1.1 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G1051 |
| Hydrocharitaceae | Thalassia testudinum | 4 | gene.Thate01g25420, gene.Thate04g17100, gene.Thate04g19200 ... |
| Plantaginaceae | Plantago ovata | 1 | Pov_00005988 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb6G29776 |
| Poaceae | Echinochloa crus-galli | 1 | AH05.3179 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-31898, nbis-gene-361 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-21262, nbisL1-mrna-22663 |
| Salicaceae | Populus euphratica | 1 | populus_peu10399 |