Basic Information
Locus ID:
nbisL1-mrna-22662
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
strubbelig-receptor family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 001111F_pilon | 42806 | 48162 | + | nbisL1-mrna-22662 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.23 | 57,511.45 Da | 34.78 | 87.07 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00560 | Leucine Rich Repeat | 174 | 196 | 0.53 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 37 | 77 | 1.6E-9 | IPR013210 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 420 | 526 | 2.5E-14 | IPR001245 |
| Pfam | PF13855 | Leucine rich repeat | 104 | 161 | 1.2E-6 | IPR001611 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 399 | 532 | 5.62E-27 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 35 | 241 | 3.17E-39 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 36 | 255 | 6.4E-49 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 403 | 532 | 5.8E-31 | - |
| SMART | SM00369 | LRR_typ_2 | 172 | 195 | 35.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 102 | 130 | 12.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 148 | 171 | 12.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 418 | 532 | 14.987 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 424 | 447 | - | IPR017441 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 105 | 118 | 2.7E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 172 | 185 | 2.7E-5 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 255 | 290 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 270 | 286 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G53730.1 | STRUBBELIG-receptor family 6. | 0 |
| RefSeq | XP_043811953.1 | protein STRUBBELIG-RECEPTOR FAMILY 6 [Manihot esculenta] | 0 |
| Q9C8M9 | Protein STRUBBELIG-RECEPTOR FAMILY 6 OS=Arabidopsis thaliana OX=3702 GN=SRF6 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2LNH5 | Leucine-rich repeat receptor-like protein kinase OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology