Basic Information
Locus ID:
nbisL1-mrna-22614
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Protein transport protein Sec24-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000487F_pilon | 510267 | 510968 | - | nbisL1-mrna-22614 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.86 | 12,741.00 Da | 36.51 | 65.97 | -0.69 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04811 | Sec23/Sec24 trunk domain | 2 | 93 | 1.5E-18 | IPR006896 |
| SUPERFAMILY | SSF53300 | vWA-like | 2 | 84 | 4.78E-17 | IPR036465 |
| Gene3D | G3DSA:3.40.50.410 | von Willebrand factor, type A domain | 1 | 100 | 1.8E-24 | IPR036465 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 83 | 114 | - | - |
Gene Ontology
Biological Process:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G07100.1 | Sec23/Sec24 protein transport family protein. Encodes SEC24a/ERMO2. Required for endoplasmic reticulum (ER) morphology. | 0 |
| RefSeq | XP_021595399.1 | protein transport protein Sec24-like At3g07100 [Manihot esculenta] | 0 |
| Q9SFU0 | Protein transport protein SEC24 A OS=Arabidopsis thaliana OX=3702 GN=SEC24A PE=1 SV=2 | 0 | |
| TrEMBL | A0A2P2ISM3 | Protein transport protein Sec24-like At3g07100 OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Thinopyrum elongatum | 5 | Tel2E01G041700, Tel2E01G041800, Tel2E01G041900 ... |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.49335.1 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-19638 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-22614 |