Basic Information
Locus ID:
nbisL1-mrna-22612
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000487F_pilon | 476812 | 482476 | + | nbisL1-mrna-22612 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.99 | 156,030.20 Da | 35.93 | 101.86 | 0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03250 | ABCC_MRP_domain1 | 535 | 735 | 1.72687E-111 | - |
| CDD | cd03244 | ABCC_MRP_domain2 | 1162 | 1382 | 3.50881E-125 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 846 | 1139 | 4.40956E-95 | IPR044726 |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 222 | 509 | 4.15362E-104 | IPR044746 |
| Pfam | PF00664 | ABC transporter transmembrane region | 848 | 1089 | 1.4E-28 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 1182 | 1329 | 1.6E-31 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 222 | 485 | 1.7E-23 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 553 | 687 | 1.7E-20 | IPR003439 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 532 | 757 | 1.09E-56 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 845 | 1144 | 1.7E-53 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 212 | 514 | 7.85E-31 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1153 | 1394 | 3.62E-67 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 811 | 1145 | 1.6E-62 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 190 | 515 | 2.0E-44 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 516 | 771 | 2.6E-75 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1147 | 1400 | 2.1E-79 | IPR027417 |
| SMART | SM00382 | AAA_5 | 562 | 735 | 3.3E-12 | IPR003593 |
| SMART | SM00382 | AAA_5 | 1190 | 1375 | 1.5E-11 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 848 | 1127 | 36.816811 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1164 | 1398 | 18.554216 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 535 | 758 | 22.349049 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 221 | 501 | 32.955067 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 660 | 674 | - | IPR017871 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 778 | 804 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 769 | 822 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_021606750.2 | ABC transporter C family member 3 isoform X1 [Manihot esculenta] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2NFS0 | ABC-type xenobiotic transporter OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology