Basic Information
Locus ID:
nbisL1-mrna-22610
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Pentatricopeptide repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 9966192 | 9968150 | - | nbisL1-mrna-22610 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.10 | 72,609.10 Da | 34.81 | 96.56 | 0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13041 | PPR repeat family | 470 | 519 | 1.2E-17 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 128 | 150 | 0.16 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 157 | 204 | 6.6E-13 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 330 | 379 | 8.0E-19 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 260 | 309 | 1.3E-15 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 552 | 597 | 7.8E-13 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 401 | 449 | 1.7E-17 | IPR002885 |
| Pfam | PF12854 | PPR repeat | 221 | 254 | 1.9E-9 | IPR002885 |
| SUPERFAMILY | SSF81901 | HCP-like | 329 | 533 | 1.54E-8 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 311 | 413 | 1.4E-31 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 541 | 652 | 2.5E-21 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 414 | 540 | 4.1E-41 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 208 | 310 | 3.9E-32 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 86 | 207 | 5.6E-18 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 368 | 401 | 4.3E-7 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 508 | 531 | 0.0024 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 438 | 472 | 1.3E-7 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 473 | 507 | 5.4E-8 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 193 | 227 | 9.8E-7 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 591 | 624 | 3.3E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 298 | 331 | 0.0012 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 228 | 261 | 1.5E-6 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 159 | 192 | 8.0E-8 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 263 | 297 | 4.0E-9 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 403 | 437 | 2.3E-12 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 333 | 367 | 4.2E-8 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 555 | 588 | 4.3E-8 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 331 | 365 | 11.904029 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 553 | 587 | 11.312119 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 261 | 295 | 12.75901 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 401 | 435 | 15.006077 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 191 | 225 | 11.257313 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 588 | 622 | 8.70333 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 226 | 260 | 10.994242 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 366 | 400 | 11.805378 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 471 | 505 | 13.471496 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 156 | 190 | 9.656963 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 296 | 330 | 9.306201 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 436 | 470 | 11.761533 | IPR002885 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_050224776.1 | pentatricopeptide repeat-containing protein At5g61400 [Mercurialis annua] | 0 |
| TrEMBL | A0A2C9UJH7 | Pentatricopeptide repeat-containing protein OS=Manihot esculenta OX=3983 GN=MANES_14G081200 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg25739 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g114320 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg31086, Sbi_jg31087, Sbi_jg58186 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg25800 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00004663 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000006569, gene:ENSEOMG00000021586 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.5BG0021750 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30144380 |
| Apiaceae | Apium graveolens | 1 | Ag10G02920 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.3138.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri2G25377 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G61400.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10005336m.g.v1.0 |
| Brassicaceae | Brassica nigra | 1 | BniB07g041170.2N |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.639 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00011897 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb1G01801, Lb2G14045, Lb2G14046 |
| Poaceae | Echinochloa crus-galli | 1 | CH02.2277 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0534900, gene-QOZ80_6BG0488090 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0484770.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_005089 |
| Poaceae | Oryza coarctata | 2 | Oco17G004930, Oco18G004970 |
| Poaceae | Oryza sativa | 2 | LOC_Os09g25050.1, LOC_Os10g15160.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G072400 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0702222, Pt_Chr0702237 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr10G010270, Chr14G013680, Chr21G012810 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G374300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG036520, gene_TRIDC5BG038530 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G229600.1.cds1, TraesCS5B02G228400.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb312410_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-30868 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g30296 |
| Posidoniaceae | Posidonia oceanica | 8 | gene.Posoc01g24530, gene.Posoc02g11950, gene.Posoc02g15500 ... |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-28766, nbisL1-mrna-28767, nbisL1-mrna-28772 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-11264 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-1755 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000008l.139 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00000224 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-22610 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-1570 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132600546 |
| Solanaceae | Solanum chilense | 1 | SOLCI005511700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107021578 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_10187 |
| Tamaricaceae | Tamarix chinensis | 1 | TC08G2365 |