Basic Information
Locus ID:
nbisL1-mrna-22591
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 9537041 | 9538381 | - | nbisL1-mrna-22591 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.29 | 50,097.80 Da | 45.69 | 94.62 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 36 | 78 | 3.78276E-24 | - |
| Pfam | PF04564 | U-box domain | 32 | 104 | 1.1E-22 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 140 | 424 | 2.51E-17 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 22 | 108 | 3.31E-32 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 13 | 109 | 5.1E-30 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 128 | 426 | 4.9E-15 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 35 | 98 | 5.4E-29 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 31 | 105 | 43.230701 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G37490.1 | ARM repeat superfamily protein. | 0 |
| RefSeq | XP_021634714.1 | U-box domain-containing protein 21 [Manihot esculenta] | 0 |
| Q5PNY6 | U-box domain-containing protein 21 OS=Arabidopsis thaliana OX=3702 GN=PUB21 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2C9UML0 | RING-type E3 ubiquitin transferase OS=Manihot esculenta OX=3983 GN=MANES_14G172900 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology