Basic Information
Locus ID:
nbisL1-mrna-22554
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
calcium-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 8751653 | 8752021 | + | nbisL1-mrna-22554 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.05 | 13,337.69 Da | 25.50 | 84.75 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 66 | 122 | 6.59075E-16 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 2 | 47 | 4.7E-7 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 66 | 122 | 1.6E-12 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 2 | 122 | 4.89E-28 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 58 | 122 | 1.3E-19 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 1 | 57 | 6.7E-9 | - |
| SMART | SM00054 | efh_1 | 66 | 94 | 3.4E-5 | IPR002048 |
| SMART | SM00054 | efh_1 | 102 | 122 | 21.0 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 62 | 97 | 13.816021 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 98 | 122 | 11.528597 | IPR002048 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G25600.1 | Calcium-binding EF-hand family protein. | 0 |
| RefSeq | XP_022736636.1 | probable calcium-binding protein CML15 [Durio zibethinus] | 0 |
| Q9LI84 | Probable calcium-binding protein CML16 OS=Arabidopsis thaliana OX=3702 GN=CML16 PE=2 SV=2 | 0 | |
| TrEMBL | A0A7J9KIN0 | Calcium-binding protein CML15 (Fragment) OS=Gossypium schwendimanii OX=34291 GN=Goshw_000198 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology