Basic Information
Locus ID:
nbisL1-mrna-22531
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 8388525 | 8390342 | + | nbisL1-mrna-22531 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.95 | 49,989.33 Da | 50.13 | 92.91 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 174 | 205 | 0.19 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 265 | 296 | 0.026 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 57 | 302 | 3.38E-33 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 12 | 346 | 2.8E-40 | IPR015943 |
| SMART | SM00320 | WD40_4 | 119 | 164 | 0.24 | IPR001680 |
| SMART | SM00320 | WD40_4 | 256 | 296 | 1.1E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 211 | 252 | 310.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 167 | 205 | 6.3E-4 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 263 | 305 | 10.809215 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 263 | 299 | 9.045603 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 283 | 297 | - | IPR019775 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G12910.1 | Transducin/WD40 repeat-like superfamily protein. Encodes a protein with similarity to the petunia WD repeat protein an11. | 0 |
| RefSeq | XP_021657892.1 | WD repeat-containing protein LWD1 [Hevea brasiliensis] | 0 |
| Q9LPV9 | WD repeat-containing protein LWD1 OS=Arabidopsis thaliana OX=3702 GN=LWD1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6A6N9Y2 | WD_REPEATS_REGION domain-containing protein OS=Hevea brasiliensis OX=3981 GN=GH714_032750 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology