Basic Information
Locus ID:
nbisL1-mrna-2252
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Ring finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 1350809 | 1353511 | + | nbisL1-mrna-2252 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.36 | 59,003.69 Da | 59.12 | 66.08 | -0.68 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 495 | 537 | 5.0E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 488 | 539 | 1.17E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 482 | 543 | 2.2E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 496 | 536 | 6.3E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 496 | 537 | 11.751628 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 103 | 131 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 25 | 44 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 343 | 377 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 49 | 75 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 156 | 179 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 343 | 375 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 27 | 44 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 213 | 290 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 213 | 227 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 158 | 179 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 247 | 286 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G24870.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_012076341.1 | probable E3 ubiquitin-protein ligase RHG1A [Jatropha curcas] | 0 |
| Q7XTV7 | Probable E3 ubiquitin-protein ligase HIP1 OS=Oryza sativa subsp. japonica OX=39947 GN=HIP1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A2P2LHR4 | RING-type domain-containing protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg23696, jg36862, jg4472, jg7785 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_8050 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah034426 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g033590 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg20440, Sbi_jg23343 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg17129 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00009087 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl63570, Sgl68063 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000017631, gene:ENSEOMG00000023258 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0013490, CQ.Regalona.r1.2BG0015530 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30251860 |
| Apiaceae | Apium graveolens | 1 | Ag1G00712 |
| Arecaceae | Cocos nucifera | 4 | COCNU_01G008390, COCNU_02G018730, COCNU_11G009580 ... |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103701523, gene-LOC103707072, gene-LOC103715640 ... |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.2439.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri14G23373, Ftri16G05214, Ftri7G16675 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT4G31450.1, AT5G10650.1, AT5G24870.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10004038m.g.v1.0, Thhalv10013256m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 3 | Sp2g22580.v2.2, Sp6g32800.v2.2, Sp7g29310.v2.2 |
| Brassicaceae | Brassica nigra | 6 | BniB02g051310.2N, BniB02g077600.2N, BniB02g085330.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G2183 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G2377 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno06g06780 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate03g22500, gene.Thate04g11290 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-347 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.1599 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00028710 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G05043, Lb2G12720 |
| Poaceae | Echinochloa crus-galli | 6 | AH06.2826, AH07.385, BH06.2621, BH07.493, CH03.4438 ... |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0549630, gene-QOZ80_6BG0502980 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.6HG0560000.1, HORVU.MOREX.r3.7HG0729000.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_007522, gene-QYE76_020561, gene-QYE76_035821 |
| Poaceae | Oryza coarctata | 4 | Oco03G002560, Oco04G002500, Oco11G016030, Oco12G016330 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g05692.1, LOC_Os06g48040.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_04G039500, gene-BS78_10G247800 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0202713, Pt_Chr0401151, Pt_Chr0401154, Pt_Chr0704530 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr02G032460, Chr05G001490, Chr10G021170, Chr11G001430 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G274700 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC6AG016050, gene_TRIDC6BG021790 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS6A02G121400.2, TraesCS6B02G149700.2 ... |
| Poaceae | Zea mays | 2 | Zm00001eb226390_P002, Zm00001eb232400_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-40650, nbis-gene-9664 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g31060, Zma_g33315 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG05.2242, evm.TU.LG07.1326, evm.TU.LG07.836 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc01g20130, gene.Posoc03g14550 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_10_RagTag.973, evm.TU.Scaffold_4_RagTag.1478 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-13516, nbisL1-mrna-26259 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-10842, nbisL1-mrna-20387 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-4314, nbisL1-mrna-9211 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000004l.248, evm.TU.utg000008l.801 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00000333, Maker00003912 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-2252, nbisL1-mrna-3693 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-7730, nbisL1-mrna-9687 |
| Salicaceae | Populus euphratica | 3 | populus_peu04583, populus_peu13068, populus_peu13069 |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132604279, gene-LOC132609497, gene-LOC132635604 |
| Solanaceae | Solanum chilense | 2 | SOLCI001004400, SOLCI001265200 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107007384, gene-LOC107028789 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.32368_chr09_+, gene_14256 |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G0982 |
| Zosteraceae | Zostera marina | 1 | Zosma03g00490.v3.1 |