Basic Information
Locus ID:
nbisL1-mrna-22484
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Agamous-like MADS-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 2327423 | 2334754 | + | nbisL1-mrna-22484 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.24 | 23,911.46 Da | 62.58 | 85.29 | -0.69 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00265 | MADS_MEF2_like | 3 | 71 | 9.91407E-43 | IPR033896 |
| Pfam | PF01486 | K-box region | 85 | 171 | 1.4E-24 | IPR002487 |
| Pfam | PF00319 | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | 7.9E-27 | IPR002100 |
| SUPERFAMILY | SSF55455 | SRF-like | 3 | 73 | 4.71E-32 | IPR036879 |
| Gene3D | G3DSA:3.40.1810.10 | - | 14 | 92 | 5.3E-29 | IPR036879 |
| SMART | SM00432 | madsneu2 | 1 | 60 | 2.2E-40 | IPR002100 |
| ProSiteProfiles | PS51297 | K-box domain profile. | 87 | 177 | 14.540462 | IPR002487 |
| ProSiteProfiles | PS50066 | MADS-box domain profile. | 1 | 61 | 31.594788 | IPR002100 |
| ProSitePatterns | PS00350 | MADS-box domain signature. | 3 | 57 | - | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 38 | 59 | 4.1E-31 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 23 | 38 | 4.1E-31 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 3 | 23 | 4.1E-31 | IPR002100 |
| Coils | Coil | Coil | 121 | 170 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G22950.1 | AGAMOUS-like 19. MADS-box protein AGL19 | 0 |
| RefSeq | XP_048229458.1 | agamous-like MADS-box protein AGL19 [Ricinus communis] | 0 |
| O82743 | Agamous-like MADS-box protein AGL19 OS=Arabidopsis thaliana OX=3702 GN=AGL19 PE=1 SV=1 | 0 | |
| TrEMBL | A0A067K164 | MADS-box protein SOC1-like OS=Jatropha curcas OX=180498 GN=JCGZ_20695 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology