Basic Information
Locus ID:
nbisL1-mrna-22480
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 6872836 | 6873624 | + | nbisL1-mrna-22480 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.03 | 29,807.34 Da | 25.91 | 97.86 | 0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 205 | 246 | 1.82962E-14 | - |
| Pfam | PF13639 | Ring finger domain | 205 | 246 | 7.8E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 205 | 252 | 2.89E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 196 | 251 | 2.8E-15 | IPR013083 |
| SMART | SM00184 | ring_2 | 206 | 246 | 6.8E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 206 | 247 | 11.441815 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G56340.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_034682151.1 | RING-H2 finger protein ATL80 [Vitis riparia] | 0 |
| TrEMBL | M8CZM0 | Uncharacterized protein OS=Aegilops tauschii OX=37682 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for nbisL1-mrna-22480.