Basic Information
Locus ID:
nbisL1-mrna-22460
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
ATPase family associated with various cellular activities (AAA)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000150F_pilon | 245979 | 252770 | - | nbisL1-mrna-22460 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.85 | 94,266.60 Da | 45.16 | 85.71 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00009 | AAA | 564 | 697 | 2.34658E-24 | - |
| Pfam | PF00004 | ATPase family associated with various cellular activities (AAA) | 566 | 696 | 8.1E-38 | IPR003959 |
| Pfam | PF17862 | AAA+ lid domain | 719 | 760 | 4.3E-10 | IPR041569 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 525 | 752 | 6.13E-57 | IPR027417 |
| Gene3D | G3DSA:1.10.8.60 | - | 698 | 780 | 1.2E-93 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 525 | 781 | 1.2E-93 | IPR027417 |
| SMART | SM00382 | AAA_5 | 562 | 699 | 1.1E-20 | IPR003593 |
| ProSitePatterns | PS00674 | AAA-protein family signature. | 669 | 688 | - | IPR003960 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 442 | 490 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 756 | 788 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 442 | 510 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 212 | 233 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 182 | 233 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 756 | 786 | - | - |
| Coils | Coil | Coil | 748 | 769 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G28000.1 | P-loop containing nucleoside triphosphate hydrolases superfamily protein. | 0 |
| RefSeq | XP_021671422.1 | nuclear valosin-containing protein-like [Hevea brasiliensis] | 0 |
| Q6NW58 | Spastin OS=Danio rerio OX=7955 GN=spast PE=2 SV=2 | 0 | |
| TrEMBL | A0A2I4GTV6 | nuclear valosin-containing protein-like OS=Juglans regia OX=51240 GN=LOC109010848 PE=4 SV=2 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology