Basic Information
Locus ID:
nbisL1-mrna-22457
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
26S proteasome non-atpase regulatory subunit
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 6453098 | 6454237 | - | nbisL1-mrna-22457 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.22 | 11,160.36 Da | 40.70 | 96.15 | 0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | G3DSA:1.10.287.3990 | - | 79 | 108 | 1.6E-13 | - |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 81 | 100 | 9.296006 | IPR003903 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G38630.1 | regulatory particle non-ATPase 10. Regulatory particle non-ATPase subunit of the 26S proteasome with multiubiquitin-chain-binding capabilities | 0 |
| RefSeq | XP_012081751.1 | 26S proteasome non-ATPase regulatory subunit 4 homolog [Jatropha curcas] | 0 |
| P55034 | 26S proteasome non-ATPase regulatory subunit 4 homolog OS=Arabidopsis thaliana OX=3702 GN=RPN10 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2J5M9 | Uncharacterized protein MANES_11G095200 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g14900 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-22457 |