Basic Information
Locus ID:
nbisL1-mrna-22454
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 001345F_pilon | 373563 | 383293 | + | nbisL1-mrna-22454 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.19 | 201,752.44 Da | 45.70 | 85.13 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00078 | HECTc | 1413 | 1863 | 6.76129E-112 | IPR000569 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 1461 | 1677 | 1.3E-23 | IPR000569 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 1714 | 1868 | 2.6E-44 | IPR000569 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 1714 | 1861 | 1.83E-42 | IPR035983 |
| SUPERFAMILY | SSF48371 | ARM repeat | 120 | 622 | 6.91E-29 | IPR016024 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 1405 | 1677 | 9.02E-42 | IPR035983 |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 1353 | 1594 | 2.1E-42 | - |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 1741 | 1866 | 1.4E-31 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 177 | 454 | 3.6E-36 | IPR011989 |
| SMART | SM00119 | hect_3 | 1424 | 1868 | 1.1E-63 | IPR000569 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 1437 | 1868 | 48.646988 | IPR000569 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 630 | 682 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 959 | 1057 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 992 | 1006 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 84 | 120 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 959 | 985 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 630 | 648 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 37 | 67 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1022 | 1042 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 660 | 682 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1072 | 1110 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 10 | 24 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1076 | 1110 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 135 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G38600.1 | HEAT repeat ;HECT-domain (ubiquitin-transferase). encodes a member of HECT ubiquitin protein ligase family that is involved in trichome cell morphogenesis. Mutants in this gene exhibit supernumerary trichome branches and increased DNA content. | 0 |
| RefSeq | XP_021659090.1 | E3 ubiquitin-protein ligase UPL3-like [Hevea brasiliensis] | 0 |
| Q6WWW4 | E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis thaliana OX=3702 GN=UPL3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A067K0H3 | HECT-type E3 ubiquitin transferase OS=Jatropha curcas OX=180498 GN=JCGZ_18809 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology