Basic Information
Locus ID:
nbisL1-mrna-22444
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000150F_pilon | 168646 | 170182 | - | nbisL1-mrna-22444 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.95 | 36,663.53 Da | 35.88 | 91.69 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 48 | 314 | 2.32255E-90 | - |
| Pfam | PF00069 | Protein kinase domain | 43 | 310 | 2.8E-45 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 29 | 314 | 1.73E-74 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 117 | 317 | 7.1E-58 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 5 | 116 | 1.4E-28 | - |
| SMART | SM00220 | serkin_6 | 42 | 312 | 7.5E-23 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 42 | 318 | 34.364712 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 48 | 70 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 163 | 175 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G01540.2 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_021671390.1 | probable serine/threonine-protein kinase At1g01540 isoform X2 [Hevea brasiliensis] | 0 |
| Q3EDL4 | Probable serine/threonine-protein kinase At1g01540 OS=Arabidopsis thaliana OX=3702 GN=At1g01540 PE=1 SV=2 | 0 | |
| TrEMBL | A0A2K1X811 | Protein kinase domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_017G146000 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg13950 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g053380 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30183510 |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G10785 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G1483 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G1574 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00010460 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G03930 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_11_RagTag.1434 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-12728 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-5514 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-22444 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000010l.401 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-1109 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-20552 |
| Salicaceae | Populus euphratica | 1 | populus_peu24678 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132631177 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107013097 |