Basic Information
Locus ID:
nbisL1-mrna-22427
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
CCR4-associated factor 1 homolog
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 13113855 | 13114664 | - | nbisL1-mrna-22427 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.88 | 30,860.74 Da | 30.02 | 90.15 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04857 | CAF1 family ribonuclease | 15 | 137 | 3.9E-13 | IPR006941 |
| Pfam | PF04857 | CAF1 family ribonuclease | 158 | 243 | 1.4E-5 | IPR006941 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 12 | 265 | 3.63E-90 | IPR012337 |
| Gene3D | G3DSA:3.30.420.10 | - | 2 | 268 | 1.6E-100 | IPR036397 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80780.1 | Polynucleotidyl transferase, ribonuclease H-like superfamily protein. | 0 |
| RefSeq | XP_021610631.1 | probable CCR4-associated factor 1 homolog 7 [Manihot esculenta] | 0 |
| Q9SAI2 | Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana OX=3702 GN=CAF1-6 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2MM76 | poly(A)-specific ribonuclease OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology