Basic Information
Locus ID:
nbisL1-mrna-22426
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
ubiquitin-protein ligase E3
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 1800351 | 1804487 | + | nbisL1-mrna-22426 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.66 | 21,861.58 Da | 69.59 | 83.04 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 147 | 190 | 1.87808E-16 | - |
| Pfam | PF13639 | Ring finger domain | 147 | 190 | 2.7E-14 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 147 | 193 | 2.87E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 110 | 193 | 1.9E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 148 | 189 | 3.7E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 148 | 190 | 13.359705 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 76 | 97 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G42360.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_028091989.1 | - | 0 |
| Q9SLC3 | E3 ubiquitin-protein ligase ATL41 OS=Arabidopsis thaliana OX=3702 GN=ATL41 PE=1 SV=1 | 0 | |
| TrEMBL | A0A4S4EGS0 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-22426 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-3509 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-6660 |