Basic Information
Locus ID:
nbisL1-mrna-22401
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Short Name:
UBC5
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 1525217 | 1528350 | + | nbisL1-mrna-22401 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.40 | 21,428.82 Da | 56.35 | 71.14 | -0.69 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 7 | 141 | 2.46203E-47 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 9 | 141 | 2.9E-38 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 11 | 147 | 1.38E-43 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 1 | 157 | 1.3E-47 | IPR016135 |
| SMART | SM00212 | ubc_7 | 4 | 147 | 2.4E-45 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 1 | 147 | 41.00589 | IPR000608 |
| ProSitePatterns | PS00183 | Ubiquitin-conjugating (UBC) active site signature. | 73 | 88 | - | IPR023313 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 144 | 158 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 159 | 173 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 144 | 185 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G63800.1 | ubiquitin-conjugating enzyme 5. | 0 |
| RefSeq | XP_007040285.1 | - | 0 |
| P42749 | Ubiquitin-conjugating enzyme E2 5 OS=Arabidopsis thaliana OX=3702 GN=UBC5 PE=2 SV=2 | 0 | |
| TrEMBL | A0A2P2L3U7 | Ubiquitin-conjugating enzyme E2-21 kDa 3 family protein OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology