Basic Information
Locus ID:
nbisL1-mrna-224
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr13 | 109842 | 118038 | - | nbisL1-mrna-224 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.88 | 167,907.88 Da | 40.86 | 106.47 | 0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03250 | ABCC_MRP_domain1 | 627 | 827 | 3.16694E-105 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 934 | 1228 | 8.57528E-95 | IPR044726 |
| CDD | cd03244 | ABCC_MRP_domain2 | 1251 | 1471 | 1.72891E-119 | - |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 313 | 601 | 6.51224E-100 | IPR044746 |
| Pfam | PF00664 | ABC transporter transmembrane region | 951 | 1180 | 4.7E-30 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 313 | 580 | 7.0E-27 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 645 | 779 | 6.1E-19 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 1270 | 1418 | 1.3E-28 | IPR003439 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 621 | 843 | 7.06E-57 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 311 | 607 | 1.57E-34 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1246 | 1483 | 9.87E-68 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 934 | 1229 | 2.09E-49 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 284 | 611 | 1.1E-48 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 899 | 1234 | 2.7E-55 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1236 | 1489 | 2.9E-78 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 625 | 856 | 1.5E-68 | IPR027417 |
| SMART | SM00382 | AAA_5 | 654 | 827 | 6.7E-10 | IPR003593 |
| SMART | SM00382 | AAA_5 | 1279 | 1471 | 7.1E-14 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 936 | 1216 | 35.738716 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 312 | 593 | 35.198719 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1255 | 1487 | 16.880222 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 627 | 850 | 22.128962 | IPR003439 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 752 | 766 | - | IPR017871 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 874 | 890 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 866 | 910 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 895 | 910 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G60160.1 | multidrug resistance-associated protein 9. member of MRP subfamily | 0 |
| RefSeq | XP_021659378.1 | putative ABC transporter C family member 15 isoform X1 [Hevea brasiliensis] | 0 |
| Q9M1C7 | ABC transporter C family member 9 OS=Arabidopsis thaliana OX=3702 GN=ABCC9 PE=2 SV=2 | 0 | |
| TrEMBL | A0A2P2JCN5 | ABC-type xenobiotic transporter OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology