Basic Information
Locus ID:
nbisL1-mrna-22351
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 1122420 | 1129471 | + | nbisL1-mrna-22351 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.83 | 119,956.56 Da | 45.31 | 71.06 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 931 | 963 | 0.077 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 845 | 879 | 0.12 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 757 | 1068 | 8.12E-45 | IPR036322 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 294 | 574 | 1.27E-16 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 293 | 577 | 9.2E-22 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 730 | 1071 | 7.3E-120 | IPR015943 |
| SMART | SM00320 | WD40_4 | 1030 | 1069 | 59.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 747 | 786 | 3.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 974 | 1013 | 74.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 925 | 963 | 7.2E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 882 | 921 | 5.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 839 | 879 | 2.4E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 797 | 836 | 0.004 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 846 | 888 | 10.007177 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 932 | 972 | 12.480124 | IPR001680 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 136 | 565 | 9.927028 | IPR000719 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 803 | 845 | 10.074014 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 932 | 965 | 10.284687 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 950 | 964 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 823 | 837 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 823 | 837 | 1.2E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 950 | 964 | 1.2E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 866 | 880 | 1.2E-5 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 24 | 43 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G11110.1 | SPA1-related 2. Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings. SPA2 primarily regulates seedling development in darkness and has little function in light-grown seedlings or adult plants. | 0 |
| RefSeq | XP_034894844.1 | protein SPA1-RELATED 2 [Populus alba] | 0 |
| Q9T014 | Protein SPA1-RELATED 2 OS=Arabidopsis thaliana OX=3702 GN=SPA2 PE=1 SV=2 | 0 | |
| TrEMBL | A0A2P2JGB6 | Protein kinase domain-containing protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology