Basic Information
Locus ID:
nbisL1-mrna-22341
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr18 | 5598110 | 5599238 | - | nbisL1-mrna-22341 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.58 | 23,250.38 Da | 48.64 | 78.14 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_002314992.2 | E3 ubiquitin-protein ligase At3g02290 isoform X2 [Populus trichocarpa] | 0 |
| TrEMBL | A0A835JTH8 | RING-type domain-containing protein OS=Salix dunnii OX=1413687 GN=SADUNF_Sadunf10G0106300 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_15_RagTag.522 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-26688 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-16300 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-15839 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000001l.261 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-22341 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-23539 |
| Salicaceae | Populus euphratica | 1 | populus_peu20875 |