Basic Information
Locus ID:
nbisL1-mrna-22335
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
inactive receptor kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 1018141 | 1019654 | + | nbisL1-mrna-22335 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.63 | 38,435.27 Da | 38.27 | 89.80 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 72 | 333 | 5.8E-12 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 70 | 336 | 1.14E-32 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 56 | 142 | 4.8E-5 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 143 | 342 | 5.0E-26 | - |
| SMART | SM00220 | serkin_6 | 61 | 336 | 2.5E-5 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 61 | 343 | 18.887983 | IPR000719 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G50230.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_043805278.1 | probable inactive receptor kinase At3g08680 [Manihot esculenta] | 0 |
| C0LGE4 | Probable LRR receptor-like serine/threonine-protein kinase At1g12460 OS=Arabidopsis thaliana OX=3702 GN=At1g12460 PE=1 SV=1 | 0 | |
| TrEMBL | A0A067JMV7 | Protein kinase domain-containing protein OS=Jatropha curcas OX=180498 GN=JCGZ_20467 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Anacardiaceae | Pistacia vera | 1 | pistato.v30134570 |
| Apiaceae | Apium graveolens | 1 | Ag8G00589 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_06.774.V1.1, AsparagusV1_06.877.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri13G14097, Ftri7G01338 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00028446 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_16_RagTag.89 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-22335 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-4375 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-20395 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000022l.444 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-3582 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-6756 |
| Salicaceae | Populus euphratica | 1 | populus_peu34525 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132637065 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC114078458 |