Basic Information
Locus ID:
nbisL1-mrna-22328
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 928441 | 932043 | + | nbisL1-mrna-22328 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.52 | 42,611.14 Da | 66.75 | 72.65 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 313 | 356 | 9.55112E-18 | - |
| Pfam | PF13639 | Ring finger domain | 312 | 356 | 7.0E-14 | IPR001841 |
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 33 | 94 | 2.5E-15 | IPR025287 |
| SUPERFAMILY | SSF57850 | RING/U-box | 307 | 359 | 2.94E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 278 | 361 | 3.4E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 314 | 355 | 8.6E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 314 | 356 | 12.961374 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G53110.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_011022503.1 | PREDICTED: RING-H2 finger protein ATL20-like [Populus euphratica] | 0 |
| Q9SKK8 | RING-H2 finger protein ATL22 OS=Arabidopsis thaliana OX=3702 GN=ATL22 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8X8D9V0 | Uncharacterized protein OS=Populus tomentosa OX=118781 GN=POTOM_014063 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology